FastQCFastQC Report
Mon 30 Mar 2015
Wilkam_R2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameWilkam_R2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences235221536
Sequences flagged as poor quality0
Sequence length101
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG336000.05.999112692-93
GCGTCGT349400.05.591948592-93
CGTGTAG331450.05.433829394-95
AGCGTCG379100.05.36179490-91
GTCGTGT381450.05.195597694-95
Produced by FastQC (version 0.11.2)