Ratus_R1.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	Ratus_R1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	249736489
Sequences flagged as poor quality	0
Sequence length	101
%GC	34

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	10935	0.0	8.743145	50-51
TATGCCG	11010	0.0	8.727633	48-49
CGTATGC	11480	0.0	8.285305	46-47
CGCGACG	370	0.0014778655	7.1430125	94-95
CCGTCTT	15870	0.0	6.4127965	52-53
GCCGTCT	11090	0.0	6.396186	50-51
TCGGAAG	92895	0.0	6.3393016	94-95
CTCGTAT	15075	0.0	6.2763352	44-45
CGGAAGA	89030	0.0	6.2339892	94-95
ACACGTC	47800	0.0	6.1071534	94-95
AGATCGG	112315	0.0	5.940576	94-95
GATCGGA	105520	0.0	5.8108053	94-95
ATGCCGT	12680	0.0	5.8005776	48-49
CACGTCT	48640	0.0	5.764581	94-95
TAGATCG	46425	0.0	5.687694	94-95
ACGTCTG	43100	0.0	5.674936	94-95
ATCGGAA	107400	0.0	5.5838113	94-95
GCACACG	53425	0.0	5.503658	92-93
CGTCTGA	40705	0.0	5.4303837	94-95