FastQCFastQC Report
Mon 30 Mar 2015
Honeyb_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHoneyb_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences222299610
Sequences flagged as poor quality0
Sequence length101
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG232900.010.10575646-47
CGTATGC236750.09.91126744-45
TGCCGTC234400.09.83835848-49
CCGTCTT281050.08.52647150-51
CTCGTAT257800.08.19002442-43
CACGATC297650.07.18158536-37
ATCACGA370750.06.655950534-35
GCCGTCT242650.05.647504348-49
ATCTCGT411150.05.53396440-41
ATGCCGT249250.05.383663746-47
TCGTATG268100.05.138040542-43
Produced by FastQC (version 0.11.2)