FastQCFastQC Report
Mon 30 Mar 2015
Amor_R2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameAmor_R2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences249796751
Sequences flagged as poor quality0
Sequence length101
%GC34

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCCGT60600.09.7041827
GTCGCCG63250.09.2971766
GGTCGCC83600.07.1464535
CGCCGTA92400.06.72384558
TGGTCGC99400.06.295754
GCCGTAT105150.06.08871469
GTGGTCG101250.06.08694123
TCCGATC106300.05.84137251
CCGATCT116100.05.71625662
CGGTGGT122000.05.1285071
Produced by FastQC (version 0.11.2)