FastQCFastQC Report
Mon 30 Mar 2015
Amor_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameAmor_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences249796751
Sequences flagged as poor quality0
Sequence length101
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG115900.06.95631348-49
TGCCGTC113300.06.948557450-51
CGTATGC116600.06.87346246-47
ACGCTCT84450.06.2920751
CTTCCGA103500.05.72530176
TCCGATC102000.05.43768938
CTCGTAT155200.05.40836144-45
CCGTCTT164750.05.123907652-53
CGGTGGT50450.05.07818031
Produced by FastQC (version 0.11.2)